Isolasi Bakteri Pendegradasi Minyak Mentah dan Polisiklik Aromatik Hidrokarbon dari Sedimen Mangrove Bintan

Nur Fitriah Afianti, Deva Febrian, Dede Falahudin

Abstract


Isolation of Crude Oil and Polycyclic Aromatic Hydrocarbon-Degrading Bacteria from Mangrove Sediments in Bintan. Bintan is known for its extensive mangrove areas, but it is prone to pollution from oil spills due to it is close to the international shipping lane. Indigenous bacteria plays important roles in bioremediation of oil spills in the natural environment. This research aims to explore indigenous bacteria from Bintan’s mangrove sediments which may have ability to degrade crude oil and polycyclic aromatic hydrocarbon (PAH). The mangrove sediment samples were taken in March 2018 from the sediments near four different mangrove plant species, i.e. Rhizophora apiculata, Xylocarpus granatum, Ceriops tagal and Lumnitzera littorea. Isolation of oil degrading bacteria was carried out using enrichment media supplemented with crude oil ALCO. A total of 45 strains of oil degrading bacteria were successfully isolated from the sediment samples. By using sublimation method, 13 bacterial isolates showed the ability to degrade various PAHs, including phenanthrene, acenaphthene, dibenzothiophene and fluorene. Sequencing analysis of 16s rRNA genes confirmed that the 13 isolated bacteria belong to the genera Rhodococcus, Bacillus, Sphingopyxis, Rhizobium, Mycobacterium, and Gordonia



Keywords


oil degrading bacteria, polycyclic aromatic hydrocarbon, mangrove sediments, biodegradation, Bintan

References


Abioye, P. O., Aziz, A., & Agamuthu, P. (2010). Enhanced Biodegradation of Used Engine Oil in Soil Amended with Organic Wastes. Water, Air, & Soil Pollution, 209(1–4), 173–179. https://doi.org/10.1007/s11270-009-0189-3

Alfiansah, Y. R., Adindasari, M., Argarini, M., Darmayati, Y., & Ruyitno, R. (2015). Isolation and distribution of crude oil and polycyclic aromatic hydrocarbon-degrading bacteria from polluted harbours in north jakarta. Marine Research in Indonesia, 39(2), 79–85. https://doi.org/10.14203/mri.v39i2.49

Alley, J. F., & Brown, L. R. (2000). Use of sublimation to prepare solid microbial media with water-insoluble substrates. Applied and Environmental Microbiology, 66(1), 439–442.

Andreote, F. D., Jiménez, D. J., Chaves, D., Dias, A. C. F., Luvizotto, D. M., Dini-Andreote, F., … de Melo, I. S. (2012). The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics. PLoS ONE, 7(6), e38600. https://doi.org/10.1371/journal.pone.0038600

Bacosa, H. P., Suto, K., & Inoue, C. (2013). Degradation potential and microbial community structure of heavy oil-enriched microbial consortia from mangrove sediments in Okinawa, Japan. Journal of Environmental Science and Health, Part A, 48(8), 835–846. https://doi.org/10.1080/10934529.2013.761476

Barnum, S. R. (2005). Biotechnology : an introduction. Belmont, CA : Thomson Brooks/Cole.

Crisafi, F., Giuliano, L., Yakimov, M. M., Azzaro, M., & Denaro, R. (2016). Isolation and degradation potential of a cold-adapted oil/PAH-degrading marine bacterial consortium from Kongsfjorden (Arctic region). Rendiconti Lincei, 27(S1), 261–270. https://doi.org/10.1007/s12210-016-0550-6

Darmayati, Y., & Afianti, N. F. (2018). Impact of slow release fertilizers on enhancing biodegradation in oil contaminated tropical sandy beach. In AIP Conference Proceedings (Vol. 2049, p. 020076). AIP Publishing LLC . https://doi.org/10.1063/1.5082481

Darmayati, Y., S. Sanusi, H., Prartono, T., Santosa, D. A., & Nuchsin, R. (2015). The Effect of Biostimulation and Biostimulation-Bioaugmentation on Biodegradation of Oil-Pollution on Sandy Beaches Using Mesocosms. International Journal of Marine Science, 5(27), 1–11. https://doi.org/10.5376/ijms.2015.05.0027

Dharmawan, I. W. E., & Ulumudin, Y. I. (2014). Estimasi Stok Karbon Ekosistem Mangrove di Pesisir Timur Kabupaten Bintan, Kepulauan Riau. Oseanologi Dan Limnologi Di Indonesia, 40(3), 267–281.

Guo, C. L., Zhou, H. W., Wong, Y. S., & Tam, N. F. Y. (2005). Isolation of PAH-degrading bacteria from mangrove sediments and their biodegradation potential. Marine Pollution Bulletin, 51(8–12), 1054–1061. https://doi.org/10.1016/J.MARPOLBUL.2005.02.012

Head, I. M., Jones, D. M., & Röling, W. F. M. (2006). Marine microorganisms make a meal of oil. Nature Reviews Microbiology, 4(3), 173–182. https://doi.org/10.1038/nrmicro1348

Huang, X., Shi, J., Cui, C., Yin, H., Zhang, R., Ma, X., & Zhang, X. (2016). Biodegradation of phenanthrene by Rhizobium petrolearium SL-1. Journal of Applied Microbiology, 121(6), 1616–1626. https://doi.org/10.1111/jam.13292

HuiJie, L., CaiYun, Y., Yun, T., GuangHui, L., & TianLing, Z. (2011). Using population dynamics analysis by DGGE to design the bacterial consortium isolated from mangrove sediments for biodegradation of PAHs. International Biodeterioration & Biodegradation, 65(2), 269–275. https://doi.org/10.1016/j.ibiod.2010.11.010

Ikenaga, M., Guevara, R., Dean, A. L., Pisani, C., & Boyer, J. N. (2010). Changes in Community Structure of Sediment Bacteria Along the Florida Coastal Everglades Marsh–Mangrove–Seagrass Salinity Gradient. Microbial Ecology, 59(2), 284–295. https://doi.org/10.1007/s00248-009-9572-2

Kanaly, R. A., & Harayama, S. (2000). Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria. Journal of Bacteriology, 182(8), 2059–2067.

Kertesz, M. A., & Kawasaki, A. (2010). Hydrocarbon-Degrading Sphingomonads: Sphingomonas, Sphingobium, Novosphingobium, and Sphingopyxis. In Handbook of Hydrocarbon and Lipid Microbiology (pp. 1693–1705). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-540-77587-4_119

Kim, J., Kim, S. J., Kim, S. H., Kim, S. I., Moon, Y. J., Park, S. J., … Chung, Y. H. (2014). Draft Genome Sequence of Sphingopyxis sp. Strain MWB1, a Crude-Oil-Degrading Marine Bacterium. Genome Announc, 2(6), e01256-14. https://doi.org/10.1128/genomeA.01256-14

Komisi VII DPR RI. (2018). Laporan kegiatan kunjungan kerja komisi VII DPR RI ke provinsi Kepulauan Riau. Retrieved June 12, 2019, from http://www.dpr.go.id/dokakd/dokumen/K7-12-aff454cdd896df85ddaa79c17dba51ce.pdf

Leys, N. M., Bastiaens, L., Verstraete, W., & Springael, D. (2005). Influence of the carbon/nitrogen/phosphorus ratio on polycyclic aromatic hydrocarbon degradation by Mycobacterium and Sphingomonas in soil. Applied Microbiology and Biotechnology, 66(6), 726–736. https://doi.org/10.1007/s00253-004-1766-4

Lin, T. C., Pan, P. T., & Cheng, S. S. (2010). Ex situ bioremediation of oil-contaminated soil. Journal of Hazardous Materials, 176(1–3), 27–34. https://doi.org/10.1016/J.JHAZMAT.2009.10.080

Marcial Gomes, N. C., Borges, L. R., Paranhos, R., Pinto, F. N., Mendonça-Hagler, L. C. S., & Smalla, K. (2008). Exploring the diversity of bacterial communities in sediments of urban mangrove forests. FEMS Microbiology Ecology, 66(1), 96–109. https://doi.org/10.1111/j.1574-6941.2008.00519.x

Ramsay, M. A., Swannell, R. P. ., Shipton, W. A., Duke, N. C., & Hill, R. T. (2000). Effect of Bioremediation on the Microbial Community in Oiled Mangrove Sediments. Marine Pollution Bulletin, 41(7–12), 413–419. https://doi.org/10.1016/S0025-326X(00)00137-5

Rizqan, I. M. (2019). Tumpahan Minyak Hitam di Pesisir Utara Pulau Bintan. Retrieved June 12, 2019, from https://kkp.go.id/bpsplpadang/artikel/9476-tumpahan-minyak-hitam-di-pesisir-utara-pulau-bintan

Ron, E. Z., & Rosenberg, E. (2014). Enhanced bioremediation of oil spills in the sea. Current Opinion in Biotechnology, 27, 191–194. https://doi.org/10.1016/J.COPBIO.2014.02.004

Roy, A. S., Baruah, R., Borah, M., Singh, A. K., Deka Boruah, H. P., Saikia, N., … Chandra Bora, T. (2014). Bioremediation potential of native hydrocarbon degrading bacterial strains in crude oil contaminated soil under microcosm study. International Biodeterioration & Biodegradation, 94, 79–89. https://doi.org/10.1016/J.IBIOD.2014.03.024

Saitou, N., & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4(4), 406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454

Sukhdhane, K. S., Pandey, P. K., Ajima, M. N. O., Jayakumar, T., Vennila, A., & Raut, S. M. (2017). Isolation and characterization of phenanthrene-degrading bacteria from PAHs contaminated mangrove sediment of Thane Creek in Mumbai, India. Polycyclic Aromatic Compounds, 1–11. https://doi.org/10.1080/10406638.2016.1261911

Sulma, S., Rahmi, K. I. N., Febrianti, N., & Sitorus, J. (2019). Deteksi tumpahan minyak menggunakan metode adaptive threshold dan analisis tekstur pada data SAR. Majalah Ilmiah Globe, 21(1), 45–52. https://doi.org/10.24895/mig.2019.21-1.925

Takeuchi, M., Hamana, K., & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. International Journal of Systematic and Evolutionary Microbiology, 51, 1405–1417. https://doi.org/10.1099/00207713-51-4-1405

Toledo, F. L., Calvo, C., Rodelas, B., & González-López, J. (2006). Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities. Systematic and Applied Microbiology, 29(3), 244–252. https://doi.org/10.1016/J.SYAPM.2005.09.003

Yetti, E., Thontowi, A., & Yopi. (2016). Polycyclic aromatic hydrocarbon degrading bacteria from the Indonesian marine environment. Biodiversitas, 17(2), 857–864. https://doi.org/10.13057/biodiv/d170263

Zhang, X., Li, B., Wang, H., Sui, X., Ma, X., Hong, Q., & Jiang, R. (2012). Rhizobium petrolearium sp. nov., isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology, 62(8), 1871–1876. https://doi.org/10.1099/ijs.0.026880-0

Zhou, H. W., Guo, C. L., Wong, Y. S., & Tam, N. F. Y. (2006). Genetic diversity of dioxygenase genes in polycyclic aromatic hydrocarbon-degrading bacteria isolated from mangrove sediments. FEMS Microbiology Letters, 262(2), 148–157. https://doi.org/10.1111/j.1574-6968.2006.00379.x


Refbacks

  • There are currently no refbacks.


Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Powered by OJS | Design by ThemeOJS